Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015952228.1_cds_XP_016491990.1_82249
CDS Infomation

[gene=LOC107811549] [db_xref=GeneID:107811549] [protein=WD repeat-containing protein 11 isoform X2] [exception=annotated by transcript or proteomic data] [protein_id=XP_016491990.1] [location=join(7282..8261,10135..10573,16722..16858,18000..18066,19911..20049,20182..20296,22303..22378,22469..22651,23073..23233,24099..24204,29250..29451,29579..29865,30076..30197,30956..31100,31207..31299,33069..33142,33232..33285,33358..>33409)] [gbkey=CDS]
Sequence

ATGTCGATACAAATTCAAAGACCACCCAATGAGTCATGGGACTGTATGTTACCGGGCCCA
CCATCCCGTTCCAATGGCGGATCCGCCGACATTTCTCCCGCCGGCCTCTTCGCTTATTCC
TCCGGCAGCTCTGTTTCAGTCGTCGAAACTCATTCCATGCAACTCGTCACCACTATTCCT
CTCCCACCCCCTACCACCTCCACTTCCTCCCTTTCTCCTTTCATCACCTCCGTTAAGTGG
TCCCCACAGCCTCTCCCGCATCTCATCGACATTCCTCAACATCACCTCCTCCTCGCTGTC
GGTGATCGTCAAGGCCGAATTTGTTTACTCGATTTCCGGTCTAAATCACCCACTGTTTTC
TTCGATACCGGTTCGGGTTCCGGTTCTAAATTAGGGATTCAGGATCTCTGTTGGGTTCAA
ACTGGACCGGATTCCTGGATCCTAGCTGCTCTCTGCGGACCGAGTTTGCTTTCTCTTTAT
AATACTTCTACTGGTCGTTGTTTCTTCAAATACGACGCGTCGCCGGAATATTTCTCGTGT
CTCCGTCGTGATCCGTTTGATTCCCGCCATTTTTGTGCCCTAGGGCTTAAAGGATTTTTG
CTTTCAGTAACTGCGTTAGGGGATACGGAGAATGATGTCGTGTTAAAGGAGCTTCAGATT
CGTACGGACGCTTCTGAATTGCTGAAGCTAGAGAGAGATTCATCTTCATCTGCTACCGGA
GGTGGTAATGGAGCTCCGGTGTCGGCTACATTTCCAACATACATGGCGAAATTCGCATTT
TCGCCGCACTGGAGGCACTTGATGTTCGTGGTATTTCCGAGGGAGTTGGTGGTGTTTGAT
CTGCAGTATGAGACGGCATTGTTCTCCGCTGGACTGCCCCGGGGATGTGGGAAGTTTCTT
GAGGTGTTGCCCGACTCGAATATTGAGGTTTTGTACTGTGCTCATCTTGATGGAAAGATC
AGTACTTGGCGGCGGAAAGACGGAGAGCAAGTGCACACAATGTGTGCGATGGAAGAGCTG
ATGCCCTCAATTGGCACATCTGTTCCCTCCCCCTCAATTCTTGCAGCTGTTATCTCCCAT
TCGGATGCCGCCCTTCAAAATATTGGCAAGCTATATTCAGATGCACATCATTCAGTTGAT
GTGGATTTTGATAATCCATTTGATTTTTGTGATGAATCTCTTGTTTTATCTAAGACTCGT
TTGATCTCCATTTCTGATGATGGGAAAGTATGGAAATGGCTCCTGACTGCTGAAGGATCT
CTAGATGTTCAGAAGGACATGACAAATCCAGATATTGTTGTAGACGCCTGTAAAACTGTA
CCTTCAGAGATTCCCATTGTTCACAATTCTGGGACTAATTCTAGCAGCAGGATCAGTCTG
TCAAAATCCCCTACAAGCCAGGATGAAGTGTCCTTCAAGGGTACAGAAAAAGCAGGTGGC
TACATCAATAGGCTTGTTGTGACATGTCTTCGAAGTGGACTCAATCGACCATTTCGAGTT
CTACAGAAGCCAGAGCGAGCACCTATTAGAGCTTTAAGGGCCTCATCTTCTGGCAGGTAC
CTTTTGATTTTGTTTCGTGATGCACCAGTAGAAGTTTGGGCTATGACTAAGACACCAATC
ATGCTTAGATCACTAGCTCTCCCGTTCACTGTGCTAGAATGGACTCTTCCAACAGTACCA
CGGCCATTGCCTAAAGATCGTCCTGCTGTACCATCAACAGAGACATCCTCCCCGACAAAA
GCAGCAGCAGCAGCAGATGCTAAAGGAGCTGGGACAGATGGATCTCAAGATGAATTTTCA
GAAAGTTTCTCTTTTGCACTAGTCAATGGTGCACTTGGTGTTTTCGAGGTTCATGGTCGA
AGGATCCGTGACTTCAGACCAAAGTGGCCTTCATCTTCATTTGTTTCATCTGAGGGATTG
GTGACGGCAATGGCCTATCGGCTGCCTCATGTGGTTATGGGAGACAGGTCAGGAAACATA
CGTTGGTGGGATGTTACTACTGGACAGTCGTCTTCATTTAATACTCATAGGGAAGGGATC
CGCAGAATCAAGTTCTCACCAGTTGTTCCTGGAGATCGTAGCCGTGGGCGTATTGCCGTT
TTGTTTTATGATAACACATTCTCGGTGTTTGATTTGGACTCGCCCGATCCATTAGCCAAT
TCACTTTTACAACCTCAATTTCCTGGAACTCTTGTGTTGGAACTCGATTGGTTGCCTTTG
CGATCAGATAAGAATGATCCACTGGTGTTATGTATTGCTGGAGCTGATAGCAGCTTTCGC
CTTGTTGAAGTCAATATAAGTGACAATAAAATGGTCCATGGTCCCCAAGCTCGACCACTC
AAAGAAAGATTTCGACCAATGCCTTTATGTTCTCCCATATTACTACCCACGCCACATGCC
CTGGCATTACGTACCATCTTACAGTTAGGTGTGAAGCCATCATGGTTTAATACATGGAGT
ACAACCTCAGATGACACGAACTACCAAGTTCCTGGAACTCCAACAGCTGGAGATCTTCGT
AATCACATGATTGAATCACCCCGTATTGGTGACTCTGTAGTGCCTGAGATGCTTCTCAAA
GTACTGGAACCTTATCGTAGAGAAGGGTGCATACTTAATGATGAGACGGTTAGACTGTAT
GCTGGTCTAGTGGATAAAGGTTCTGCAGTAAGGTTTGCCTTCGCTGCTGCTATATTTGGT
GAACCCATGGAAGCTCTTTTCTGGCTGCAATTACCGCGAGCTCTAAACTACTGGATGAAT
AGATTGACTAACAAGTCTCCAACAAGAGCCCCTCAATCAGCTTCAACTTCAGAACTTGAT
GAAGCATCTATGTTAAATAGGATATCATCAAAGGGAAAGTCAGGGCCTGGAACGGGAAAA
AATAATGCTTTGGGCAACGGTCAACTTCAGCTGATGGCCTTTGAACAACAAGAGTTGTGG
GAGCGTGCTAATGAGCAGATTCCTTGGCATGAAAAGCTGGAAGGAGAAGAGGCAATTCAA
AACCGTGTTCACGAATTAGTATCGATTGGGAACCTAGAGGCTGCAGTTAGTTTACTGCTC
TCCACACCTCCAGAGAGCTCTTATTTCTATGCAAATGCATTGCGTGCCGTTGCCCTTTCT
TCAGCTGTATCAACGTCTTTACTTGAGCTAGCCGTGAAGGTTGTTGCTGCCAATATGGTG
AGAACAGACCGGTCCTTGTCTGGAACACATCTCCTTTGTGCTGTTGGCAGGTATCAAGAA
GCTTGTTCTCAGTTACAAGATGCTGGATGCTGGACTGATGCTGCAACATTAGCAGCAACA
CATCTAAAAGGAACTGATTATGCAAGGGTTTTGCTAAGGTGGGCTCAGCATGTTCTTCAT
TCTGAACACAACATTTGGAGGGCACTTATCTTGTATGTTGCTGCTGGTGCATTGCCAGAG
GCATTGGCTGCT

Peptide Sequence

PEP ID

XP_016491990.1
PEP Infomation

PREDICTED: WD repeat-containing protein 11 isoform X2 [Nicotiana tabacum]
Sequence

MSIQIQRPPNESWDCMLPGPPSRSNGGSADISPAGLFAYSSGSSVSVVETHSMQLVTTIP
LPPPTTSTSSLSPFITSVKWSPQPLPHLIDIPQHHLLLAVGDRQGRICLLDFRSKSPTVF
FDTGSGSGSKLGIQDLCWVQTGPDSWILAALCGPSLLSLYNTSTGRCFFKYDASPEYFSC
LRRDPFDSRHFCALGLKGFLLSVTALGDTENDVVLKELQIRTDASELLKLERDSSSSATG
GGNGAPVSATFPTYMAKFAFSPHWRHLMFVVFPRELVVFDLQYETALFSAGLPRGCGKFL
EVLPDSNIEVLYCAHLDGKISTWRRKDGEQVHTMCAMEELMPSIGTSVPSPSILAAVISH
SDAALQNIGKLYSDAHHSVDVDFDNPFDFCDESLVLSKTRLISISDDGKVWKWLLTAEGS
LDVQKDMTNPDIVVDACKTVPSEIPIVHNSGTNSSSRISLSKSPTSQDEVSFKGTEKAGG
YINRLVVTCLRSGLNRPFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKTPI
MLRSLALPFTVLEWTLPTVPRPLPKDRPAVPSTETSSPTKAAAAADAKGAGTDGSQDEFS
ESFSFALVNGALGVFEVHGRRIRDFRPKWPSSSFVSSEGLVTAMAYRLPHVVMGDRSGNI
RWWDVTTGQSSSFNTHREGIRRIKFSPVVPGDRSRGRIAVLFYDNTFSVFDLDSPDPLAN
SLLQPQFPGTLVLELDWLPLRSDKNDPLVLCIAGADSSFRLVEVNISDNKMVHGPQARPL
KERFRPMPLCSPILLPTPHALALRTILQLGVKPSWFNTWSTTSDDTNYQVPGTPTAGDLR
NHMIESPRIGDSVVPEMLLKVLEPYRREGCILNDETVRLYAGLVDKGSAVRFAFAAAIFG
EPMEALFWLQLPRALNYWMNRLTNKSPTRAPQSASTSELDEASMLNRISSKGKSGPGTGK
NNALGNGQLQLMAFEQQELWERANEQIPWHEKLEGEEAIQNRVHELVSIGNLEAAVSLLL
STPPESSYFYANALRAVALSSAVSTSLLELAVKVVAANMVRTDRSLSGTHLLCAVGRYQE
ACSQLQDAGCWTDAATLAATHLKGTDYARVLLRWAQHVLHSEHNIWRALILYVAAGALPE
ALAALRGAQQPDTAAMFILACREIHSEYLSSLDDELRSSDKLVNLPGLNPESEDVTAVGE
YYGQYQRKLVHLCMDSQPFSD

Transcript Sequence

Gene sequence data has not been registered.